Package: banffIT 1.0.0
Guillaume Fabre
banffIT: Automatize Diagnosis Standardized Assignation Using the Banff Classification
Assigns standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report. The package is developed on the reference guide to the Banff classification of renal allograft pathology Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>. The full description of the Banff classification is available at <https://banfffoundation.org/>.
Authors:
banffIT_1.0.0.tar.gz
banffIT_1.0.0.zip(r-4.5)banffIT_1.0.0.zip(r-4.4)banffIT_1.0.0.zip(r-4.3)
banffIT_1.0.0.tgz(r-4.4-any)banffIT_1.0.0.tgz(r-4.3-any)
banffIT_1.0.0.tar.gz(r-4.5-noble)banffIT_1.0.0.tar.gz(r-4.4-noble)
banffIT_1.0.0.tgz(r-4.4-emscripten)banffIT_1.0.0.tgz(r-4.3-emscripten)
banffIT.pdf |banffIT.html✨
banffIT/json (API)
NEWS
| # Install 'banffIT' in R: |
| install.packages('banffIT', repos = c('https://personalizedtransplantcare.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/personalizedtransplantcare/banffit/issues
Last updated 4 months agofrom:691b9e9f1a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | OK | Sep 08 2024 |
| R-4.5-linux | OK | Sep 08 2024 |
| R-4.4-win | OK | Sep 08 2024 |
| R-4.4-mac | OK | Sep 08 2024 |
| R-4.3-win | OK | Sep 08 2024 |
| R-4.3-mac | OK | Sep 08 2024 |
Exports:add_diagnosesbanff_dataset_evaluatebanff_launcherbanffIT_websitecalculate_adequacydataset_cat_as_labelsdataset_summarizeget_banff_dictionaryget_banff_exampleget_banff_template
Dependencies:askpassbase64encbitbit64bookdownbslibcachemcellrangerclicliprcolorspacecpp11crayoncredentialscrosstalkcurldescdigestdplyrDTevaluatefabRfansifarverfastmapfontawesomeforcatsfsgenericsgertggplot2ghgitcredsgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttr2iniisobandjaneaustenrjanitorjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemadshapRmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppreadrreadxlrematchrlangrmarkdownrprojrootrstudioapisassscalessnakecaseSnowballCstringistringrsystibbletidyrtidyselecttidytexttimechangetinytextokenizerstzdbusethisutf8vctrsviridisLitevroomwhiskerwithrwritexlxfunyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add diagnoses to the input dataset | add_diagnoses |
| Evaluates the format and content of the input dataset | banff_dataset_evaluate |
| Launch the program | banff_launcher |
| Call the online documentation | banffIT_website |
| Calculate adequacy of each biopsy from glomeruli and arteries variables | calculate_adequacy |
| Objects exported from other packages | dataset_cat_as_labels |
| Objects exported from other packages | dataset_summarize |
| Get the Banff data dictionary | get_banff_dictionary |
| Get a dataset example | get_banff_example |
| Get a dataset template | get_banff_template |
