{
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  "Package": "banffIT",
  "Type": "Package",
  "Title": "Automated Standardized Assignment of the Banff Classification",
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  "Authors@R": "c(person(given = \"Guillaume\",\nfamily = \"Fabre\",\nrole = c(\"aut\",\"cre\"),\nemail = \"guijoseph.fabre@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0124-9970\")),\nperson(given = \"Ruth\",\nfamily = \"Sapir-Pichhadze\",\nrole=c(\"fnd\",\"cph\",\"ctb\"),\nemail=\"ruth.sapir-pichhadze@mcgill.ca\"),\nperson(given = \"Jan Ulrich\",\nfamily = \"Becker\",\nrole=c(\"ctb\"),\nemail=\"janbecker@gmx.com\"),\nperson(given = \"Samuel\",\nfamily = \"El Bouzaïdi Tiali\",\nrole=c(\"ctb\"),\nemail=\"sbtiali@maelstrom-research.org\"),\nperson(given = \"Jérôme\",\nfamily = \"Laforme\",\nrole=c(\"ctb\"),\nemail=\"jlaforme@maelstrom-research.org\"),\nperson(given = \"Tina\",\nfamily = \"Wey\",\nrole=c(\"ctb\"),\nemail=\"twey@maelstrom-research.org\"),\nperson(given = \"Edden\",\nfamily = \"Gitelman\",\nrole=c(\"ctb\"),\nemail=\"edden.gitelman@mail.mcgill.ca\"))",
  "Maintainer": "Guillaume Fabre <guijoseph.fabre@gmail.com>",
  "Description": "Assigns standardized diagnoses using the Banff\nClassification (Category 1 to 6 diagnoses, including Acute and\nChronic active T-cell mediated rejection as well as Active,\nChronic active, and Chronic antibody mediated rejection). The\nmain function considers a minimal dataset containing biopsies\ninformation in a specific format (described by a data\ndictionary), verifies its content and format (based on the data\ndictionary), assigns diagnoses, and creates a summary report.\nThe package is developed on the reference guide to the Banff\nclassification of renal allograft pathology Roufosse C,\nSimmonds N, Clahsen-van Groningen M, et al. A (2018)\n<doi:10.1097/TP.0000000000002366>. The full description of the\nBanff classification is available at\n<https://banfffoundation.org/>.",
  "License": "GPL-3",
  "URL": "https://github.com/PersonalizedTransplantCare/banffIT",
  "BugReports": "https://github.com/PersonalizedTransplantCare/banffIT/issues",
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  "Repository": "https://personalizedtransplantcare.r-universe.dev",
  "Date/Publication": "2025-10-06 14:51:48 UTC",
  "RemoteUrl": "https://github.com/personalizedtransplantcare/banffit",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Guillaume Fabre [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0124-9970>),\nRuth Sapir-Pichhadze [fnd, cph, ctb],\nJan Ulrich Becker [ctb],\nSamuel El Bouzaïdi Tiali [ctb],\nJérôme Laforme [ctb],\nTina Wey [ctb],\nEdden Gitelman [ctb]",
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  "_expires": "2027-01-13T08:33:55.000Z",
  "_created": "2026-10-05T08:29:59.000Z",
  "_published": "2026-10-05T08:33:57.599Z",
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    "message": "correct index mixup for adequacy calculated\n",
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  "_selfowned": true,
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    "add_diagnoses",
    "banff_dataset_evaluate",
    "banff_launcher",
    "banffIT_website",
    "calculate_adequacy",
    "dataset_cat_as_labels",
    "dataset_summarize",
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    "get_banff_example",
    "get_banff_template",
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    {
      "page": "add_diagnoses",
      "title": "Add diagnoses to the input dataset",
      "topics": [
        "add_diagnoses"
      ]
    },
    {
      "page": "banff_dataset_evaluate",
      "title": "Evaluates the format and content of the input dataset",
      "topics": [
        "banff_dataset_evaluate"
      ]
    },
    {
      "page": "banff_launcher",
      "title": "Launch the program",
      "topics": [
        "banff_launcher"
      ]
    },
    {
      "page": "banffIT_website",
      "title": "Call the online documentation",
      "topics": [
        "banffIT_website"
      ]
    },
    {
      "page": "calculate_adequacy",
      "title": "Calculate adequacy of each biopsy from glomeruli and arteries variables",
      "topics": [
        "calculate_adequacy"
      ]
    },
    {
      "page": "dataset_cat_as_labels",
      "title": "Objects exported from other packages",
      "topics": [
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    },
    {
      "page": "dataset_summarize",
      "title": "Objects exported from other packages",
      "topics": [
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    },
    {
      "page": "get_banff_dictionary",
      "title": "Get the Banff data dictionary",
      "topics": [
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    },
    {
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      "title": "Get a dataset example",
      "topics": [
        "get_banff_example"
      ]
    },
    {
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      "title": "Get a dataset template",
      "topics": [
        "get_banff_template"
      ]
    },
    {
      "page": "get_banff_version",
      "title": "Extract version of the Banff classification",
      "topics": [
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