Package: banffIT
Type: Package
Title: Automated Standardized Assignment of the Banff Classification
Version: 2.0.0
Authors@R: 
    c(person(given = "Guillaume",
             family = "Fabre",
             role = c("aut","cre"),
             email = "guijoseph.fabre@gmail.com",
             comment = c(ORCID = "0000-0002-0124-9970")),
      person(given = "Ruth",
             family = "Sapir-Pichhadze",
             role=c("fnd","cph","ctb"),
             email="ruth.sapir-pichhadze@mcgill.ca"),
      person(given = "Jan Ulrich",
             family = "Becker",
             role=c("ctb"),
             email="janbecker@gmx.com"),
      person(given = "Samuel",
             family = "El Bouzaïdi Tiali",
             role=c("ctb"),
             email="sbtiali@maelstrom-research.org"),
      person(given = "Jérôme",
             family = "Laforme",
             role=c("ctb"),
             email="jlaforme@maelstrom-research.org"),
      person(given = "Tina",
             family = "Wey",
             role=c("ctb"),
             email="twey@maelstrom-research.org"),
      person(given = "Edden",
             family = "Gitelman",
             role=c("ctb"),
             email="edden.gitelman@mail.mcgill.ca"))
Maintainer: Guillaume Fabre <guijoseph.fabre@gmail.com>
Description: Assigns standardized diagnoses using the Banff
        Classification (Category 1 to 6 diagnoses, including Acute and
        Chronic active T-cell mediated rejection as well as Active,
        Chronic active, and Chronic antibody mediated rejection). The
        main function considers a minimal dataset containing biopsies
        information in a specific format (described by a data
        dictionary), verifies its content and format (based on the data
        dictionary), assigns diagnoses, and creates a summary report.
        The package is developed on the reference guide to the Banff
        classification of renal allograft pathology Roufosse C,
        Simmonds N, Clahsen-van Groningen M, et al. A (2018)
        <doi:10.1097/TP.0000000000002366>. The full description of the
        Banff classification is available at
        <https://banfffoundation.org/>.
License: GPL-3
Depends: R (>= 3.4)
URL: https://github.com/PersonalizedTransplantCare/banffIT
BugReports: https://github.com/PersonalizedTransplantCare/banffIT/issues
Roxygen: list(markdown = TRUE)
Imports: dplyr (>= 1.1.0), rlang, tools, utils, crayon, stringr, fs,
        lubridate, tidyr, fabR, madshapR (>= 2.0.0)
Suggests: knitr, rmarkdown, usethis
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.2.3
Config/pak/sysreqs: cmake git make libgit2-dev libicu-dev libuv1-dev
        libssl-dev libx11-dev zlib1g-dev
Repository: https://personalizedtransplantcare.r-universe.dev
Date/Publication: 2025-10-06 14:51:48 UTC
RemoteUrl: https://github.com/personalizedtransplantcare/banffit
RemoteRef: HEAD
RemoteSha: 5b43d59aab4baaa0edd58f376fa2ae5535d1e378
NeedsCompilation: no
Packaged: 2026-10-05 08:29:59 UTC; root
Author: Guillaume Fabre [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0124-9970>),
  Ruth Sapir-Pichhadze [fnd, cph, ctb],
  Jan Ulrich Becker [ctb],
  Samuel El Bouzaïdi Tiali [ctb],
  Jérôme Laforme [ctb],
  Tina Wey [ctb],
  Edden Gitelman [ctb]